Lecture 24

We will discuss principal component analysis and its uses.

Lay discussions about principal components are available in Chapter 17 of your text, The Statistical Sleuth, in Chapter 14 of Biostatistics by van Belle, Fisher, Heagerty, and Lumley, as well as on the WEB at: http://www.okstate.edu/artsci/botany/ordinate/PCA.htm
and
http://www.eng.man.ac.uk/mech/merg/Research/datafusion.org.uk/pca.html
A more technical discussion may be found in Chapter 8 of Applied Multivariate Statistical Analysis by Johnson and Wichern.

Responder_Type	Individual	Day_0	Day_1	Day_2	Day_7	Day_14	Day_28	log_0	log_1	log_2	log_7	log_14	log_28
Y	1	11414.9	17461.9	19303.3	11776.5	16481.6	18769.7	9.34267	9.7678	9.8680	9.3739	9.7100	9.8400
Y	2	11761.8	26143.5	24651.6	22734.7	16481.6	18769.7	9.37261	10.1714	10.1126	10.0316	9.7100	9.8400
Y	3	13664.3	26074.4	22826.3	18222.6	16155.2	18769.7	9.52254	10.1687	10.0357	9.8104	9.6900	9.8400
Y	4	11540.1	53371.2	61456.4	25517.4	26815.9	22790.4	9.35359	10.8850	11.0261	10.1471	10.1967	10.0341
Y	5	12081.6	21713.0	15061.9	18078.2	16990.9	18769.7	9.39944	9.9857	9.6199	9.8025	9.7404	9.8400
Y	6	9997.6	21122.8	18664.2	28093.0	17939.0	29943.9	9.21010	9.9581	9.8344	10.2433	9.7947	10.3071
Y	7	7507.8	21262.9	15972.3	16410.8	14589.2	17415.9	8.92369	9.9647	9.6786	9.7057	9.5880	9.7651
Y	8	8663.9	22601.0	18865.3	18441.0	18494.9	18851.7	9.06692	10.0257	9.8451	9.8223	9.8252	9.8444
Y	9	10706.0	22932.3	19430.3	22860.4	23034.1	19384.8	9.27856	10.0403	9.8746	10.0372	10.0447	9.8722
Y	10	11614.7	19930.5	21020.7	16272.9	15381.5	16397.6	9.36003	9.9000	9.9533	9.6973	9.6409	9.7049
Y	11	7802.8	25495.1	19997.9	18060.6	22315.5	23126.0	8.96224	10.1462	9.9034	9.8015	10.0130	10.0487
Y	12	11213.6	25262.6	18758.3	12626.1	11362.1	14796.9	9.32488	10.1371	9.8394	9.4435	9.3380	9.6022
Y	13	7521.9	18282.0	15244.6	10057.4	12532.0	14402.7	8.92557	9.8137	9.6320	9.2161	9.4360	9.5752
Y	14	10290.3	19072.7	20434.0	16148.9	16282.7	20384.0	9.23896	9.8560	9.9250	9.6896	9.6979	9.9225
Y	15	7518.6	21373.2	17259.6	14275.1	14281.1	14966.9	8.92513	9.9699	9.7561	9.5663	9.5667	9.6136
N	1	11693.3	20623.1	18839.2	23948.0	12456.5	13359.7	9.36677	9.9342	9.8437	10.0836	9.4300	9.5000
N	2	20489.0	56887.2	39841.9	43468.9	11498.8	13226.8	9.92765	10.9488	10.5927	10.6798	9.3500	9.4900
N	3	7599.7	20925.4	6854.2	9596.4	13722.0	11977.9	8.93586	9.9487	8.8326	9.1691	9.5268	9.3908
N	4	7475.1	19415.8	15230.0	6848.3	11161.2	15119.8	8.91934	9.8738	9.6310	8.8318	9.3202	9.6238
N	5	10536.5	10951.1	10996.7	13369.7	10599.3	14111.2	9.26260	9.3012	9.3054	9.5007	9.2685	9.5547
N	6	10056.6	17893.1	16079.3	9024.5	9527.8	16989.9	9.21598	9.7922	9.6853	9.1077	9.1620	9.7404
N	7	13547.0	16276.9	19004.6	13346.8	14270.3	23868.3	9.51392	9.6975	9.8524	9.4990	9.5659	10.0803
N	8	9225.6	15606.1	14296.7	8159.4	9728.2	10655.3	9.12973	9.6554	9.5678	9.0069	9.1828	9.2738
N	9	6928.8	19736.4	16362.1	22876.9	17034.6	8942.5	8.84345	9.8902	9.7027	10.0379	9.7430	9.0986
N	10	8199.4	21073.4	17104.9	14532.5	19080.1	16211.2	9.01182	9.9558	9.7471	9.5841	9.8564	9.6935
N	11	4650.1	21729.2	17025.4	16531.0	13747.7	19303.6	8.44464	9.9864	9.7425	9.7130	9.5286	9.8680
N	12	15412.9	13787.9	16970.1	9014.1	10419.9	9833.3	9.64296	9.5315	9.7392	9.1065	9.2515	9.1935
N	13	9633.2	12790.3	15948.7	14265.2	16672.7	8620.1	9.17297	9.4564	9.6771	9.5656	9.7215	9.0619
N	14	9776.1	15146.7	25677.6	8918.9	9816.2	14995.3	9.18769	9.6255	10.1534	9.0959	9.1918	9.6155
N	15	10396.0	14976.9	9150.4	2070.1	8064.8	11081.9	9.24918	9.6143	9.1216	7.6353	8.9953	9.3131
N	16	12738.2	14799.0	11447.3	12654.1	13134.8	11278.5	9.45236	9.6023	9.3455	9.4457	9.4830	9.3307
N	17	10548.1	22913.1	20334.0	17160.7	16512.1	17327.8	9.26370	10.0395	9.9200	9.7504	9.7118	9.7601
N	18	7783.7	19817.7	18347.2	14450.5	19288.9	13262.9	8.95979	9.8943	9.8172	9.5785	9.8673	9.4927