Phylogenetics Homework 8

Consider the DNA sequence evolution of the 6-phosphogluconate dehydrogenase, decarboxylating (gnd) gene in the following organisms:

Encephalitozoon cuniculi (Fungus)
Dictyostelium discoideum (Slime mold)
Synechococcus elongatus (Cyanobacteria)
Cronobacter dublinensis (Proteobacteria)
Candidatus Solibacter usitatus (Acidobacteria)
Leptotrichia goodfellowii (Fusobacteria)
Borrelia garinii (Spirochaetes)
Phycisphaera mikurensis (Planctomycetes)
Mycobacterium tuberculosis (Actinobacteria)
Anaerolinea thermophila (Chloroflexi)
Chlamydia trachomatis (Chlamydiae)
Lactococcus lactis (Firmicutes)

Run a Bayesian analysis with the best model that you can use. Report "the" phylogeny and the clade credibility values. I am assuming that you are using Mr. Bayes for this analysis. If you use other software, please tell me.